Seminars Sorted by Series

Workshop on Topology: Identifying Order in Complex Systems

Dec
10
2014

Workshop on Topology: Identifying Order in Complex Systems

Topological similarity of random cell complexes, and applications
Benjamin Schweinhart
3:30pm|S-101

Although random cell complexes occur throughout the physical sciences, there does not appear to be a standard way to quantify their statistical similarities and differences. I'll introduce the notions of a 'swatch' and a 'cloth', which provide a...

Dec
10
2014

Workshop on Topology: Identifying Order in Complex Systems

The law of Aboav--Weaire and extensions
5:00pm|S-101

In two-dimensional grain structure, one observes that grains with a small number of sides tend to be surrounded by grains with a large number of sides, and vice-versa. The Law of Aboav--Weaire gives this observation a mathematical formulation, that...

Mar
06
2015

Workshop on Topology: Identifying Order in Complex Systems

Loops and Self Reference in Language and Life
2:00pm|S-101

We will discuss the notion of loops in linguistic structures, mainly in dictionaries. In a simplified view, a dictionary is a graph that links every word (vertex) to a set of alternative words (the definition) which in turn point to further...

Apr
18
2015

Workshop on Topology: Identifying Order in Complex Systems

Characterizing force-chain network architecture in granular materials
Danielle Bassett
10:00am|S-101

Force chains form heterogeneous physical structures that can constrain the mechanical stability and acoustic transmission of granular media. However, despite their relevance for predicting bulk properties of materials, there is no agreement on a...

Apr
18
2015

Workshop on Topology: Identifying Order in Complex Systems

Entanglement of embedded graphs
Toen Castle
11:30am|S-101

Even simple graphs can be embedded in space ($\mathbb E^3$ or $\mathbb S^3$) in a topologically complex way. If there is a cycle in the graph then there can be knots in the embedding, if there are disjoint cycles then there can be links. However...

Apr
18
2015

Workshop on Topology: Identifying Order in Complex Systems

A new potential theory for the Maxwell equations
Leslie Greengard
2:00pm|S-101

Existing formulations of Maxwell's equations encounter numerical difficulties in geometries with sub-wavelength features and/or non-trivial genus. We will describe a new system of boundary value problems for the electromagnetic vector and scalar...

Apr
18
2015

Workshop on Topology: Identifying Order in Complex Systems

A topological approach for investigating the intrinsic structure of neural activity
Vladimir Itskov
3:30pm|S-101

Experimental neuroscience is achieving rapid progress in the ability to collect neural activity and connectivity data. Detecting meaningful structure in this data is challenging because the measured quantities are related to more "fundamental"...

Apr
18
2015

Workshop on Topology: Identifying Order in Complex Systems

Sensors, sampling, and scale selection: a homological approach
Don Sheehy
5:00pm|S-101

In their seminal work on homological sensor networks, de Silva and Ghrist showed the surprising fact that its possible to certify the coverage of a coordinate free sensor network even with very minimal knowledge of the space to be covered. We give a...

Nov
07
2015

Workshop on Topology: Identifying Order in Complex Systems

Critical mechanical structures: topology and entropy
Xiaoming Mao
10:00am|S-101

Critical mechanical structures are structures at the verge of mechanical instability. These structures are characterized by their floppy modes, which are deformations costing little energy. On the one hand, numerous interesting phenomena in soft...

Nov
07
2015

Workshop on Topology: Identifying Order in Complex Systems

Topological effects in metals: from chiral and gyrotropic magnetic effects to quenched Majoranas
Joel Moore
11:30am|S-101

The recent advances in our understanding of topological states of free-fermion insulators give some valuable concepts and tools for the analysis of metals. The first part of this talk focuses on low-energy electrodynamic responses of simple metals...

Nov
07
2015

Workshop on Topology: Identifying Order in Complex Systems

Topological and combinatorial methods in Theoretical Distributed Computing
Dmitry Feichtner-Kozlov
2:00pm|S-101

In the first half of the talk I will give a very compressed introduction into parts of Theoretical Distributed Computing from the point of view of mathematician. I will describe how to construct simplicial models whose combinatorics contains...

Nov
07
2015

Workshop on Topology: Identifying Order in Complex Systems

Hierarchical clustering on asymmetric networks
Facundo Mémoli
3:30pm|S-101

The problem of determining clusters in a data set admits different interpretations depending on whether the data is metric, symmetric but not necessarily metric, or asymmetric. Whereas there is a good degree of understanding of what are the natural...

Nov
07
2015

Workshop on Topology: Identifying Order in Complex Systems

Interactive visualization of 2-D persistence modules
5:00pm|S-101

In topological data analysis, we often study data by associating to the data a filtered topological space, whose structure we can then examine using persistent homology. However, in many settings, a single filtered space is not a rich enough...

Apr
09
2016

Workshop on Topology: Identifying Order in Complex Systems

Volumes of the basins of attraction for mechanically stable disk packings
Corey O'Hern
11:30am|David Rittenhouse Laboratory Room A4, University of Pennsylvania

Experimental and computational model systems composed of frictionless particles in a fixed geometry have a finite number of distinct mechanically stable (MS) packings. The frequency of occurrence for each MS packing is highly variable and depends...

Apr
09
2016

Workshop on Topology: Identifying Order in Complex Systems

Metrics on the space of shapes, and applications to biology
3:30pm|David Rittenhouse Laboratory Room A4, University of Pennsylvania

The problem of comparing shapes turns up in different guises in numerous fields. I will discuss a new metric on the space of smooth Riemannian 2-spheres that is well suited for comparing geometric similarity. The metric is based on a distortion...

Apr
09
2016

Workshop on Topology: Identifying Order in Complex Systems

A topological predictor of protein compressibility
5:00pm|David Rittenhouse Laboratory Room A4, University of Pennsylvania

A standard question in contemporary proteomics asks which properties of proteins may be directly inferred from their molecular structure. Using only X-Ray crystallography data (of the type which is cataloged in the Protein Data Bank), I will outline...

Apr
01
2017

Workshop on Topology: Identifying Order in Complex Systems

Complexity in different contexts
Saugata Basu
10:00am

The notion of complexity appears in many different contexts, including in the theory of computation, but also in topology and geometry. In the context of computational complexity there are also famous open questions about separations of complexity...

Apr
01
2017

Workshop on Topology: Identifying Order in Complex Systems

Multiscale methods for dictionary learning, regression and optimal transport for data near low-dimensional sets
Mauro Maggioni
4:45pm

We discuss a family of ideas, algorithms, and results for analyzing various new and classical problems in the analysis of high-dimensional data sets. These methods we discuss perform well when data is (nearly) intrinsically low-dimensional. They...

Apr
07
2018

Workshop on Topology: Identifying Order in Complex Systems

Toplogies of the zero sets of random real projective hyper-surfaces and of monochromatic waves
9:00am|Simonyi Hall 101

Nazarov and Sodin have shown that the zero set of a random real homogeneous polynomial in n+1 variables and of large degree has many components and the same is true for the random harmonic such polynomial ("mono-chromatic waves") .We show that for...

Apr
07
2018

Workshop on Topology: Identifying Order in Complex Systems

Topological filters: a toolbox for processing dynamic signals
Michael Robinson
10:30am|Simonyi Hall 101

Using the geometry of sheaves as the common language, this talk will bridge three separate areas: dynamical systems, signal processing, and data fusion. Because sheaves model consistency relationships between local data, they are easily assembled...

Apr
07
2018

Workshop on Topology: Identifying Order in Complex Systems

Fitting manifolds to data
Charlie Fefferman
1:30pm|Simonyi Hall 101

The problems come in two flavors.

Extrinsic Flavor: Given a point cloud in R^N sampled from an unknown probability density, how can we decide whether that probability density is concentrated near a low-dimensional manifold M with reasonable...

Apr
07
2018

Workshop on Topology: Identifying Order in Complex Systems

Studying Fluid Flows with Persistent Homology
Rachel Levanger
3:00pm|Simonyi Hall 101

We will showcase persistent homology as a promising new tool for use in the study of complicated fluid flows. Through a collection of examples spanning 2D Kolmogorov and Rayleigh-Bénard convection flows to fully-developed 3D turbulence and...

Apr
07
2018

Workshop on Topology: Identifying Order in Complex Systems

Protein Folding Characterization via Persistent Homology
Marcio Gameiro
4:30pm|Simonyi Hall 101

We use persistent homology to analyze predictions of protein folding by trying to identify global geometric structures that contribute to the error when the protein is misfolded. The goal is to find correlations between global geometric structures...

Oct
09
2020

Workshop on Topology: Identifying Order in Complex Systems

Parameters in indexed homology
Simon Cho
2:00pm|Remote Access - see Zoom link below

Motivated by thematic similarities between persistent homology and magnitude homology, we describe a simplicial construction associated to a metric space. This construction is determined by (apart from the metric space itself) a choice of two...

Oct
23
2020

Workshop on Topology: Identifying Order in Complex Systems

How to describe, analyze and interrogate dynamics of gene regulatory networks
Tomas Gedeon
2:00pm|Remote Access - see Zoom link below

We first describe mathematical foundation of DSGRN (Dynamic Signatures Generated by Regulatory Networks), an approach that provides a queryable description of global dynamics of a network over its entire param- eter space. We describe a connection...

Nov
06
2020

Workshop on Topology: Identifying Order in Complex Systems

Algebraic and topological models for DNA recombination
Nataša Jonoska
2:00pm|Remote Access Only

DNA rearrangement is observed at developmental and evolutionary scale. The recombination process can be directly modeled by 4-regular graphs and Gauss codes, also called double occurrence words. We discuss properties of these graphs, their spatial...

Nov
20
2020

Workshop on Topology: Identifying Order in Complex Systems

Topological methods for characterizing the relationship between polymer entanglement and viscoelasticity
Eleni Panagiotou
2:00pm|Remote Access Only

Polymers are macromolecules that cannot cross each other without breaking their bonds. This leads to polymer chain entanglement which determines bulk viscoelastic responses of the material. Understanding the relation between entanglement and...

Dec
04
2020

Workshop on Topology: Identifying Order in Complex Systems

Raytracing and raymarching simulations of non-euclidean geometries
Henry Segerman
2:00pm|Remote Access Only

I'll talk about two related projects, with two different groups, both aiming to see three-dimensional manifolds "from the inside". That is, we generate images assuming that light travels along geodesics in the geometry of the manifold. The first...

Mar
05
2021

Workshop on Topology: Identifying Order in Complex Systems

Persistent matchmaking
Uli Bauer
2:00pm|Remote Access

In this talk, I will give an overview of some recent results motivated by the computation and applications of persistent homology, a theory that creates a bridge between the continuous world of topology and the discrete world of data, and assigns...

Mar
19
2021

Workshop on Topology: Identifying Order in Complex Systems

Physics of functional networks
Henrik Ronellenfitsch
2:00pm|Remote Access

We are surrounded by functional networks, from fluid transport in plants and animals to macroscopic elastic scaffoldings and microscopic crystals and materials, and engineered power grids. Often, such networks can be seen as optimized for their...

Apr
02
2021

Workshop on Topology: Identifying Order in Complex Systems

The missing link
2:00pm|Remote Access

Links of strata in singular spaces are fundamental invariants which govern the topology of small neighbourhoods around points in those strata. This talk will focus on inferring links of strata from incomplete information in three completely...

Apr
16
2021

Workshop on Topology: Identifying Order in Complex Systems

From geometry to topology: inverse theorems for distributed persistence
Paul Bendich
3:00pm|Remote Access

What is the "right" topological invariant of a large point cloud $X$? Prior research has focused on estimating the full persistence diagram of $X$, a quantity that is very expensive to compute, unstable to outliers, and far from a sufficient...

Apr
30
2021

Workshop on Topology: Identifying Order in Complex Systems

Twisted topological tangles or: the knot theory of knitting
Elisabetta Matsumoto
2:00pm|Remote Access

The Picard group of the stable module category of a finite group plays a role in many parts of modular representation theory. It was calculated when the group is an abelian $p$-group, by pioneering work of Dade in the 1970's, and a classification...